read_snp_pairs: Import pairs of DAE and DAEQTL candidate SNPs

In maialab/daeqtlr: DAEQTL Mapping

Import pairs of DAE and DAEQTL candidate SNPs

Description

This function reads in a table of pairs of SNPs from a CSV file: the DAE SNP and candidate DAEQTL SNP. One pair per row. The file must have a header with the columns:

• dae_snp: the DAE SNP.

• candidate_snp: the candidate DAEQTL SNP.

• chromosome: the chromosome where the pair is located.

• dae_snp_position: the DAE SNP position on the chromosome.

• candidate_snp_position: the candidate DAEQTL SNP position on the chromosome.

Usage

read_snp_pairs(file, ...)

Arguments

file	A path to a file.
...	Extra arguments to be passed on to data.table::fread().

Value

A data frame.

See Also

create_snp_pairs()

maialab/daeqtlr documentation built on May 18, 2022, 6:53 a.m.