README.md

In maialba3/LipidMS: Lipid Annotation for LC-MS/MS DDA or DIA Data

LipidMS v3.0

Lipid Annotation for LC-MS/MS DIA and DDA data analysis. New features:

• Batch processing: peak-picking, grouping and alignment wrapped in batchdataProcessing(). Lipid annotation for msbatch objects simplified with annotatemsbatch().
• New lipid classes: plasmanyl and plasmenyl PC and PE, acylceramides and ceramides phosphate.
• GUI through shiny app running LipidMSapp().
• Improved graphical outputs for lipid annotation.

Citation:

If you use this software in your research, please cite:

• Alcoriza-Balaguer MI., et al. (2019) LipidMS: An R Package for Lipid Annotation in Untargeted Liquid Chromatography-Data Independent Acquisition-Mass Spectrometry Lipidomics. Anal Chem, 2019, 91(1), 836-845. doi:10.1021/acs.analchem.8b03409.
• LipidMS 3.0: an R-package and a web-based tool for LC-MS/MS data processing and lipid annotation. bioRxiv, 2022. doi.org/10.1101/2022.02.25.476005

References:

• Peak-picking algorithm has been imported from enviPick R-package (Martin Loos) (https://github.com/blosloos/enviPick)

maialba3/LipidMS documentation built on Sept. 6, 2024, 9:07 p.m.