Code for analysing the results of CoalHMM runs

bayes_factor | Compute the Bayes factor between two models. |

coalhmm_chain | Creates an object for manipulating CoalHMM MCMC chains |

convergence_diagnostics | Computes convergence diagnostics |

convergence_probabilities | Computes the probability of convergence at each windows |

convergence_t_tests | Computes convergence diagnistics |

equal_distribution | Compares the distributions for each parameter for two chains... |

mergeable_chains | Tests if a list of chains can be merged |

model_likelihood | Computes the model log likelihood from MCMC posterior samples |

parameter_samples | Extract the parameters from the samples data frame |

rejected_convergence | Determines if the diagnistics means that we reject... |

strip_burnin | Remove the estimated burn-in samples |

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