parameter_samples: Extract the parameters from the samples data frame
In mailund/coalhmm-analysis: Code for analysing the results of CoalHMM runs

Description Usage Arguments Details Value

Pulls out the columns that corresponds sampled parameters rather than the probabilities, that is it returns a data frame without the "log.prior", "log.likelihood" and "log.posterior" columns.

1	parameter_samples(samples)

samples

Data frame with samples from a CoalHMM MCMC.

For packages that implements convergence diagnostics, such as coda, we need the samples with only the parameters and not the prior and posterior probabilities or the likelihood.

This function simply returns that from a data frame of samples as output by the CoalHMM MCMC samplers.

The samples containing only the parameter columns.

mailund/coalhmm-analysis documentation built on May 21, 2019, 11:06 a.m.