haplo_params: Title
In malemay/HaplotypeMiner: Gene-centered haplotyping from SNP data

haplo_params

R Documentation

Title

Description

Usage

haplo_params(input_file = NULL, kinship_file = NULL,
  structure_file = NULL, gene_db_file = NULL, chr_db_file = NULL,
  gene_name = NULL, gene_chrom = NULL, gene_start = NULL,
  gene_end = NULL, chr_length = NULL, file_format = NULL,
  R2_measure = "r2", min_alt_threshold = NULL, max_het_threshold = 0,
  max_missing_threshold = 0, min_allele_count = 1,
  cluster_threshold = 0.95, cluster_R2 = R2_measure,
  marker_independence_threshold = 0.5, max_flanking_pair_distance = 3 *
  10^6, max_marker_to_gene_distance = 10^12)

Arguments

`input_file`	To be completed
`kinship_file`	To be completed
`structure_file`	To be completed
`gene_db_file`	To be completed
`chr_db_file`	To be completed
`gene_name`	To be completed
`gene_chrom`	To be completed
`gene_start`	To be completed
`gene_end`	To be completed
`chr_length`	To be completed
`file_format`	To be completed
`R2_measure`	To be completed
`min_alt_threshold`	To be completed
`max_het_threshold`	To be completed
`max_missing_threshold`	To be completed
`min_allele_count`	To be completed
`cluster_threshold`	To be completed
`cluster_R2`	To be completed
`marker_independence_threshold`	To be completed
`max_flanking_pair_distance`	To be completed
`max_marker_to_gene_distance`	To be completed