Files in malemay/HaplotypeMiner
Gene-centered haplotyping from SNP data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/HaplotypeMiner.R
R/cluster.R
R/cluster_selection.R
R/compute_ld.R
R/density_plot.R
R/distance_plot.R
R/genotype_filter.R
R/genotype_plot.R
R/gmgia-dataset.R
R/haplo_graphs.R
R/haplo_logfile.R
R/haplo_output.R
R/haplo_params.R
R/haplo_selection.R
R/haplotypes.R
R/is_valid.R
R/ld_plot.R
R/mac.R
R/marker_subset.R
R/r2expr.R
R/read_hapmap.R
R/read_kinship.R
R/read_structure.R
R/read_vcf.R
R/restore_markers.R
R/subcluster.R
R/sysdata.rda
R/write_hapmap.R
R/write_vcf.R
README.md
data-raw/gmgia_haplotypes.R
data-raw/graph_options.R
data/gmgia_haplotypes.rda
inst/extdata/SNP_data.hmp.txt
inst/extdata/gene_db.txt
inst/extdata/gmax_chr_sizes.txt
inst/extdata/kinship.txt
inst/extdata/structure.txt
man/HaplotypeMiner.Rd
man/cluster.Rd
man/cluster_selection.Rd
man/compute_ld.Rd
man/density_plot.Rd
man/distance_plot.Rd
man/genotype_filter.Rd
man/genotype_plot.Rd
man/gmgia_haplotypes.Rd
man/haplo_graphs.Rd
man/haplo_logfile.Rd
man/haplo_output.Rd
man/haplo_params.Rd
man/haplo_selection.Rd
man/haplotypes.Rd
man/is_valid.Rd
man/ld_plot.Rd
man/mac.Rd
man/marker_subset.Rd
man/r2expr.Rd
man/read_hapmap.Rd
man/read_kinship.Rd
man/read_structure.Rd
man/read_vcf.Rd
man/restore_markers.Rd
man/subcluster.Rd
man/write_hapmap.Rd
man/write_vcf.Rd
vignettes/HaplotypeMiner-Overview.Rmd
