dot-analyzeUpstreamValidity: Plots the validity of upstream sequences
In malhamdoosh/abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries
Description
Usage
Arguments
Value
Description
Plots the distribution of valid, faulty, and missing start
codon in IGV germlines (repeated for gene and family levels).
Usage
1
2
3
.analyzeUpstreamValidity(upstreamDirectories, upstreamOut, expectedLength,
upstreamLengthRange, sampleNames, combinedNames, mashedNames,
.save = TRUE)
Arguments
upstreamDirectories
list type. List of sample directories
upstreamOut
string type. Output directory
expectedLength
int type. Expected length of upstream sequences.
(i.e. upstream_end - upstream_start + 1). If this is infinite, no plots
will be generated.
upstreamLengthRange
string type. start_end format
sampleNames
vector type. 1-1 with upstream directories
combinedNames
string type. Title friendly "combined" sample names
mashedNames
string type. File friendly "mashed-up" sample names
.save
logical type. Save Rdata?
Value
None
malhamdoosh/abseqR documentation built on May 24, 2019, 12:36 a.m.
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Description Usage Arguments Value
Description
Plots the distribution of valid, faulty, and missing start codon in IGV germlines (repeated for gene and family levels).
Usage
1 2 3 | .analyzeUpstreamValidity(upstreamDirectories, upstreamOut, expectedLength,
upstreamLengthRange, sampleNames, combinedNames, mashedNames,
.save = TRUE)
|
Arguments
upstreamDirectories |
list type. List of sample directories |
upstreamOut |
string type. Output directory |
expectedLength |
int type. Expected length of upstream sequences. (i.e. upstream_end - upstream_start + 1). If this is infinite, no plots will be generated. |
upstreamLengthRange |
string type. start_end format |
sampleNames |
vector type. 1-1 with upstream directories |
combinedNames |
string type. Title friendly "combined" sample names |
mashedNames |
string type. File friendly "mashed-up" sample names |
.save |
logical type. Save Rdata? |
Value
None
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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