dot-loadMatrixFromDF: Given a dataframe with the columns "from", "to", and...

Description Usage Arguments Value

Description

Given a dataframe with the columns "from", "to", and value.var, return a symmetric matrix (with diagonal values = diag). I.e. a call to isSymmetric(return_value_of_this_function) will always be TRUE.

Usage

1
.loadMatrixFromDF(dataframe, value.var, diag, unidirectional = TRUE)

Arguments

dataframe

dataframe with 3 required columns, namely: +—————————————+ | from | to | value.var | ... | +—————————————+ | | | | | +—————————————+ where value.var is the string provided in the function parameter

value.var

the column to use as the matrix value

diag

what should the diagonal values be if the dataframe doesn't provide them

unidirectional

logical type. If the dataframe provided has the reverse pairs (i.e. a from-to pair AND a to-from pair with the save values in the value.var column), then this should be FALSE. Otherwise, this function will flip the from-to columns to generate a symmetric dataframe (and hence, a symmetric matrix).

Value

a symmetric matrix with rownames(mat) == colnames(mat) The diagonal values are filled with diag if the dataframe itself doesn't have diagonal data


malhamdoosh/abseqR documentation built on May 24, 2019, 12:36 a.m.