TagDist: TagDist
In mana-W/LinTInd: Lineage tracing by indels

Description Usage Arguments Details Value Examples

If the cell barcode and the anntation of each cell are provided, this function can calculate the relationship between each cell type in three way

1	TagDist(tag, method = NULL)

tag

List generate from TagProcess, for more see TagProcess

method

Denote which method to use:

"Jaccard"(default): calculate the weighted jaccard similarity of indels between each pair of groups;
"P": right-tailed test, compare the Indels intersection level with the hypothetical result generated from random editing, and the former is expected to be significantly higher than the latter;
"spearman": Spearman correlation of indels between each pair of groups

Title

2 figures are saved to show the distribution of INDEL and the relationship between groups respectively, the matrix of the relationship between groups is returned

tag_dist=TagDist(tag,method = "spearman")
tag_dist=TagDist(tag)
tag_dist=TagDist(tag,method = "Jaccard")
tag_dist=TagDist(tag,method = "P")
tag_dist=TagDist(tag,method = "spearman")