R/pmonthly.varlist.r
In manfredo89/ED2io: Manages Input/Output for Ecosystem Demography 2 Model
#------------------------------------------------------------------------------------------#
#------------------------------------------------------------------------------------------#
# List of possible plots. In case you don't want some of them, simply switch plt to F. #
#------------------------------------------------------------------------------------------#
#----- Time series per PFT. ---------------------------------------------------------------#
tspftdbh = list()
n = 1
tspftdbh[[n]] = list( vnam = "agb"
, desc = "Above ground biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 1
n = n + 1
tspftdbh[[n]] = list( vnam = "ddbh_dt"
, desc = "Mean DBH increment"
, e.unit = untab$mmoy
, i.unit = untab$mmoy
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "agb10"
, desc = "Above ground biomass (adults)"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 1
n = n + 1
tspftdbh[[n]] = list( vnam = "biomass"
, desc = "Total biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 2
n = n + 1
tspftdbh[[n]] = list( vnam = "ba"
, desc = "Basal area"
, e.unit = untab$cm2om2
, i.unit = untab$cm2opl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 3
n = n + 1
tspftdbh[[n]] = list( vnam = "ba10"
, desc = "Basal area (adults)"
, e.unit = untab$cm2om2
, i.unit = untab$cm2opl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 3
n = n + 1
tspftdbh[[n]] = list( vnam = "lai"
, desc = "Leaf area index"
, e.unit = untab$m2lom2
, i.unit = untab$m2lom2
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 4
n = n + 1
tspftdbh[[n]] = list( vnam = "gpp"
, desc = "Gross primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcom2opl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 5
n = n + 1
tspftdbh[[n]] = list( vnam = "npp"
, desc = "Net primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "nppr"
, desc = "Root Net primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "npps"
, desc = "Sapwood Net primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "nppl"
, desc = "Leaf Net primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "nppx"
, desc = "Seed Net primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "nppw"
, desc = "Wood Net primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "lco"
, desc = "Leaf litter"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "balive"
, desc = "Biomass of active tissues"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = FALSE
)#end list 7
n = n + 1
tspftdbh[[n]] = list( vnam = "bdead"
, desc = "Structural biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list 8
n = n + 1
tspftdbh[[n]] = list( vnam = "bleaf"
, desc = "Leaf biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list 9
n = n + 1
tspftdbh[[n]] = list( vnam = "broot"
, desc = "Root biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list 10
n = n + 1
tspftdbh[[n]] = list( vnam = "bstem"
, desc = "Stem biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list 11
n = n + 1
tspftdbh[[n]] = list( vnam = "bsapwood"
, desc = "Sapwood biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list 12
n = n + 1
tspftdbh[[n]] = list( vnam = "bseeds"
, desc = "Seed biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "bstorage"
, desc = "Storage biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list 13
n = n + 1
tspftdbh[[n]] = list( vnam = "mort"
, desc = "Mortality rate"
, e.unit = untab$pcpopoyr
, i.unit = untab$pcpopoyr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "ncbmort"
, desc = "Mortality rate - Neg. C balance"
, e.unit = untab$pcpopoyr
, i.unit = untab$pcpopoyr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "dimort"
, desc = "Mortality rate - Density independent"
, e.unit = untab$pcpopoyr
, i.unit = untab$pcpopoyr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "acc.growth"
, desc = "Growth rate"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list 15
n = n + 1
tspftdbh[[n]] = list( vnam = "acc.mort"
, desc = "Mortality rate"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "acc.ncbmort"
, desc = "Mortality rate - Neg. C balance"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "acc.dimort"
, desc = "Mortality rate - Density independent"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "acc.recr"
, desc = "Recruitment rate"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "nplant"
, desc = "Plant density"
, e.unit = untab$plom2
, i.unit = untab$plom2
, plog = TRUE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 14
n = n + 1
tspftdbh[[n]] = list( vnam = "nplant10"
, desc = "Plant density (adults)"
, e.unit = untab$plom2
, i.unit = untab$plom2
, plog = TRUE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 14
n = n + 1
tspftdbh[[n]] = list( vnam = "f.bstorage"
, desc = "Relative storage biomass"
, e.unit = untab$kgcokgc
, i.unit = untab$kgcokgc
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "f.bleaf"
, desc = "Relative leaf biomass"
, e.unit = untab$kgcokgc
, i.unit = untab$kgcokgc
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "f.bstem"
, desc = "Relative stem biomass"
, e.unit = untab$kgcokgc
, i.unit = untab$kgcokgc
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "f.broot"
, desc = "Relative root biomass"
, e.unit = untab$kgcokgc
, i.unit = untab$kgcokgc
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "f.bseeds"
, desc = "Relative seed biomass"
, e.unit = untab$kgcokgc
, i.unit = untab$kgcokgc
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "leaf.resp"
, desc = "Leaf respiration"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "stem.resp"
, desc = "Stem respiration"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "root.resp"
, desc = "Root respiration"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list
####################################################################################
####################################################################################
####################################################################################
####################################################################################
patch_plots = list()
n = 1
patch_plots[[n]] = list( vnam = "maxh"
, desc = "Maximum height"
, e.unit = untab$m
, i.unit = untab$m
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 1
n=n+1
patch_plots[[n]] = list( vnam = "agb"
, desc = "Above Ground Biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 2
n=n+1
patch_plots[[n]] = list( vnam = "bleaf"
, desc = "Leaf Biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 2
n=n+1
patch_plots[[n]] = list( vnam = "lai"
, desc = "Leaf Area Index"
, e.unit = untab$m2lom2
, i.unit = untab$m2lom2
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 4
n=n+1
patch_plots[[n]] = list( vnam = "gpp"
, desc = "Gross Primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcom2opl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 5
n=n+1
patch_plots[[n]] = list( vnam = "nplant"
, desc = "Plant density"
, e.unit = untab$plom2
, i.unit = untab$plom2
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 1
n=n+1
patch_plots[[n]] = list( vnam = "growth"
, desc = "Growth rate"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list 1
#------------------------------------------------------------------------------------------#
emean_plots = list()
n = 1
emean_plots[[n]] = list( vnam = "het.resp"
, desc = "Heterotrophic respiration"
, unit = untab$kgcom2oyr
)#end list 1
n=n+1
emean_plots[[n]] = list( vnam = "cwd.resp"
, desc = "CWD respiration"
, unit = untab$kgcom2oyr
)#end list 1
#------------------------------------------------------------------------------------------#
# Define the number of plots of each kind, and make the lists global. #
#------------------------------------------------------------------------------------------#
tserdist <<- TRUE # Time series of disturbance rates
ntspftdbh <<- length(tspftdbh)
npatch_plots <<- length(patch_plots)
nemean_plots <<- length(emean_plots)
#------------------------------------------------------------------------------------------#
manfredo89/ED2io documentation built on May 21, 2019, 11:24 a.m.
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#------------------------------------------------------------------------------------------#
#------------------------------------------------------------------------------------------#
# List of possible plots. In case you don't want some of them, simply switch plt to F. #
#------------------------------------------------------------------------------------------#
#----- Time series per PFT. ---------------------------------------------------------------#
tspftdbh = list()
n = 1
tspftdbh[[n]] = list( vnam = "agb"
, desc = "Above ground biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 1
n = n + 1
tspftdbh[[n]] = list( vnam = "ddbh_dt"
, desc = "Mean DBH increment"
, e.unit = untab$mmoy
, i.unit = untab$mmoy
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "agb10"
, desc = "Above ground biomass (adults)"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 1
n = n + 1
tspftdbh[[n]] = list( vnam = "biomass"
, desc = "Total biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 2
n = n + 1
tspftdbh[[n]] = list( vnam = "ba"
, desc = "Basal area"
, e.unit = untab$cm2om2
, i.unit = untab$cm2opl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 3
n = n + 1
tspftdbh[[n]] = list( vnam = "ba10"
, desc = "Basal area (adults)"
, e.unit = untab$cm2om2
, i.unit = untab$cm2opl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 3
n = n + 1
tspftdbh[[n]] = list( vnam = "lai"
, desc = "Leaf area index"
, e.unit = untab$m2lom2
, i.unit = untab$m2lom2
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 4
n = n + 1
tspftdbh[[n]] = list( vnam = "gpp"
, desc = "Gross primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcom2opl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 5
n = n + 1
tspftdbh[[n]] = list( vnam = "npp"
, desc = "Net primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "nppr"
, desc = "Root Net primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "npps"
, desc = "Sapwood Net primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "nppl"
, desc = "Leaf Net primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "nppx"
, desc = "Seed Net primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "nppw"
, desc = "Wood Net primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 6
n = n + 1
tspftdbh[[n]] = list( vnam = "lco"
, desc = "Leaf litter"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "balive"
, desc = "Biomass of active tissues"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = FALSE
)#end list 7
n = n + 1
tspftdbh[[n]] = list( vnam = "bdead"
, desc = "Structural biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list 8
n = n + 1
tspftdbh[[n]] = list( vnam = "bleaf"
, desc = "Leaf biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list 9
n = n + 1
tspftdbh[[n]] = list( vnam = "broot"
, desc = "Root biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list 10
n = n + 1
tspftdbh[[n]] = list( vnam = "bstem"
, desc = "Stem biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list 11
n = n + 1
tspftdbh[[n]] = list( vnam = "bsapwood"
, desc = "Sapwood biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list 12
n = n + 1
tspftdbh[[n]] = list( vnam = "bseeds"
, desc = "Seed biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "bstorage"
, desc = "Storage biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list 13
n = n + 1
tspftdbh[[n]] = list( vnam = "mort"
, desc = "Mortality rate"
, e.unit = untab$pcpopoyr
, i.unit = untab$pcpopoyr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "ncbmort"
, desc = "Mortality rate - Neg. C balance"
, e.unit = untab$pcpopoyr
, i.unit = untab$pcpopoyr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "dimort"
, desc = "Mortality rate - Density independent"
, e.unit = untab$pcpopoyr
, i.unit = untab$pcpopoyr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "acc.growth"
, desc = "Growth rate"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list 15
n = n + 1
tspftdbh[[n]] = list( vnam = "acc.mort"
, desc = "Mortality rate"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "acc.ncbmort"
, desc = "Mortality rate - Neg. C balance"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "acc.dimort"
, desc = "Mortality rate - Density independent"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "acc.recr"
, desc = "Recruitment rate"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "nplant"
, desc = "Plant density"
, e.unit = untab$plom2
, i.unit = untab$plom2
, plog = TRUE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 14
n = n + 1
tspftdbh[[n]] = list( vnam = "nplant10"
, desc = "Plant density (adults)"
, e.unit = untab$plom2
, i.unit = untab$plom2
, plog = TRUE
, pft = TRUE
, pftdbh = TRUE
, bar.plot = TRUE
, stack = TRUE
, scsout = TRUE
)#end list 14
n = n + 1
tspftdbh[[n]] = list( vnam = "f.bstorage"
, desc = "Relative storage biomass"
, e.unit = untab$kgcokgc
, i.unit = untab$kgcokgc
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "f.bleaf"
, desc = "Relative leaf biomass"
, e.unit = untab$kgcokgc
, i.unit = untab$kgcokgc
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "f.bstem"
, desc = "Relative stem biomass"
, e.unit = untab$kgcokgc
, i.unit = untab$kgcokgc
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "f.broot"
, desc = "Relative root biomass"
, e.unit = untab$kgcokgc
, i.unit = untab$kgcokgc
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "f.bseeds"
, desc = "Relative seed biomass"
, e.unit = untab$kgcokgc
, i.unit = untab$kgcokgc
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "leaf.resp"
, desc = "Leaf respiration"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "stem.resp"
, desc = "Stem respiration"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list
n = n + 1
tspftdbh[[n]] = list( vnam = "root.resp"
, desc = "Root respiration"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = TRUE
, scsout = TRUE
)#end list
####################################################################################
####################################################################################
####################################################################################
####################################################################################
patch_plots = list()
n = 1
patch_plots[[n]] = list( vnam = "maxh"
, desc = "Maximum height"
, e.unit = untab$m
, i.unit = untab$m
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 1
n=n+1
patch_plots[[n]] = list( vnam = "agb"
, desc = "Above Ground Biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 2
n=n+1
patch_plots[[n]] = list( vnam = "bleaf"
, desc = "Leaf Biomass"
, e.unit = untab$kgcom2
, i.unit = untab$kgcopl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 2
n=n+1
patch_plots[[n]] = list( vnam = "lai"
, desc = "Leaf Area Index"
, e.unit = untab$m2lom2
, i.unit = untab$m2lom2
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 4
n=n+1
patch_plots[[n]] = list( vnam = "gpp"
, desc = "Gross Primary productivity"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcom2opl
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 5
n=n+1
patch_plots[[n]] = list( vnam = "nplant"
, desc = "Plant density"
, e.unit = untab$plom2
, i.unit = untab$plom2
, plog = FALSE
, pft = FALSE
, pftdbh = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = FALSE
)#end list 1
n=n+1
patch_plots[[n]] = list( vnam = "growth"
, desc = "Growth rate"
, e.unit = untab$kgcom2oyr
, i.unit = untab$kgcoployr
, plog = FALSE
, pft = TRUE
, pftdbh = TRUE
, sas = FALSE
, bar.plot = FALSE
, stack = FALSE
, scsout = TRUE
)#end list 1
#------------------------------------------------------------------------------------------#
emean_plots = list()
n = 1
emean_plots[[n]] = list( vnam = "het.resp"
, desc = "Heterotrophic respiration"
, unit = untab$kgcom2oyr
)#end list 1
n=n+1
emean_plots[[n]] = list( vnam = "cwd.resp"
, desc = "CWD respiration"
, unit = untab$kgcom2oyr
)#end list 1
#------------------------------------------------------------------------------------------#
# Define the number of plots of each kind, and make the lists global. #
#------------------------------------------------------------------------------------------#
tserdist <<- TRUE # Time series of disturbance rates
ntspftdbh <<- length(tspftdbh)
npatch_plots <<- length(patch_plots)
nemean_plots <<- length(emean_plots)
#------------------------------------------------------------------------------------------#
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