GetMultilayerMotifs: Return the multilayer motifs. Note that even if inter-links...

In manlius/muxViz: MuxViz - Visualization and Analysis of Multilayer Networks

Return the multilayer motifs. Note that even if inter-links are present, they will be neglected and the network treated as an edge-colored multigraph

Description

Return the multilayer motifs. Note that even if inter-links are present, they will be neglected and the network treated as an edge-colored multigraph

Usage

GetMultilayerMotifs(
  SupraAdjacencyMatrix,
  Layers,
  Nodes,
  bin.path = NA,
  motifSize = 3,
  motifSamples = 1e+05,
  isDirected = FALSE,
  motifNullModel = "Local const",
  randomNetworks = 1000,
  randomExchangePerEdges = 3,
  randomExchangeAttempts = 3
)

Arguments

SupraAdjacencyMatrix	the supra-adajcency matrix
Layers	scalar, number of layers
Nodes	scalar, number of nodes
bin.path	path, full path where the FANMOD binary executable is located
motifSize	integer, size of motifs to find (3 or 4)
motifSamples	integer, number of samples used to determine approx. # of motifs
isDirected	logical, indicates if the search is for an undirected or directed network
motifNullModel	string, "Local const", "Global const", or "No regard"
randomNetworks	integer, number of random networks
randomExchangePerEdges	integer, number of exchanges per edge
randomExchangeAttempts	integer, number of exchange attempts per edge

Value

Motifs Table

manlius/muxViz documentation built on March 1, 2023, 10:28 a.m.