GetMultilayerMotifsFromNetworkList: Calculates the Motifs of a Multilayer from a network list

In manlius/muxViz: MuxViz - Visualization and Analysis of Multilayer Networks

Calculates the Motifs of a Multilayer from a network list

Description

Calculates the Motifs of a Multilayer from a network list

Usage

GetMultilayerMotifsFromNetworkList(
  g.list,
  bin.path = NA,
  motifSize = 3,
  motifSamples = 1e+05,
  isDirected = FALSE,
  motifNullModel = "Local const",
  randomNetworks = 1000,
  randomExchangePerEdges = 3,
  randomExchangeAttempts = 3
)

Arguments

g.list	list of igraph network objects
bin.path	path, full path where the FANMOD binary executable is located
motifSize	integer, size of motifs to find (3 or 4)
motifSamples	integer, number of samples used to determine approx. # of motifs
isDirected	logical, indicates if the search is for an undirected or directed network
motifNullModel	string, "Local const", "Global const", or "No regard"
randomNetworks	integer, number of random networks
randomExchangePerEdges	integer, number of exchanges per edge
randomExchangeAttempts	integer, number of exchange attempts per edge

Value

Motifs Table

References

: Sebastian Wernicke and Florian Rasche, Bioinformatics 22, 1152 (2006) doi 10.1093/bioinformatics/btl038

Version implemented by Tomer Benyamini, Yoav Teboulle, Tel-Aviv University https://github.com/gtremper/Network-Motif/tree/master/fanmod/FANMOD-command_line-source

manlius/muxViz documentation built on March 1, 2023, 10:28 a.m.