API for manzomonza/auto-ngs-annotation
Editing, Parsing And Annotation of ThermoFisher IonReporter and Genexus Precision NGS Results
| Global functions | |
|---|---|
| ClassficationDe | Man page Source code |
| ClassficationFr | Man page Source code |
| FusionOutput | Man page Source code |
| activityList_format | Man page Source code |
| addMissingCols | Man page Source code |
| allelecolumnCheck | Man page Source code |
| amino_acid_conversion_one_to_three | Man page Source code |
| amino_acid_conversion_three_to_one | Man page Source code |
| annotateWatchdogTables | Man page Source code |
| bimiMatchUp | Man page Source code |
| checkTSG | Man page Source code |
| clinvarCheck | Man page Source code |
| clinvarSingleRow | Man page Source code |
| clinvarTableOutput | Man page Source code |
| cnvAnnot | Man page Source code |
| cnvParse | Man page Source code |
| complex_one_to_three | Man page Source code |
| cosmic_counter_per_table_element | Man page Source code |
| cosmic_counter_wrapper | Man page Source code |
| cosmic_sql_search | Man page Source code |
| count_variants_per_panel | Man page Source code |
| counter_cosmic_variant_tissue | Man page Source code |
| cp_mv_gnxs | Man page Source code |
| create_output_files | Man page Source code |
| diagnose_D_F_columns_snv | Man page Source code |
| exonAnnot | Man page Source code |
| extract_snv_position | Man page Source code |
| fsClinvarfix | Man page Source code |
| fusionInfoParser | Man page Source code |
| fusionParser | Man page Source code |
| gene_symbol_sub | Man page Source code |
| gene_symbol_sub_table | Man page Source code |
| infoName | Man page Source code |
| info_cancerHotspots | Man page Source code |
| make_output_tables | Man page Source code |
| make_output_tables_precision | Man page Source code |
| mtbpFormat | Man page Source code |
| mult100 | Man page Source code |
| oneORthree_code | Man page Source code |
| one_three_aa_precision | Man page Source code |
| orderSignificance | Man page Source code |
| percentParse | Man page Source code |
| precisionPipeline_TableOutput | Man page Source code |
| prep_chr | Man page Source code |
| prep_coding | Source code |
| prep_filepaths | Man page Source code |
| prep_integrate | Source code |
| prep_position | Source code |
| prep_rowwise | Source code |
| readIn | Man page Source code |
| read_rename_select | Man page Source code |
| read_rename_select_precision_snv | Man page Source code |
| renameCol | Man page Source code |
| row_activityList_format_cnv | Man page Source code |
| row_activityList_format_snv | Man page Source code |
| saveReport_xlsx | Man page Source code |
| shortenFilename | Man page Source code |
| snvParse | Man page Source code |
| splicesite_Annot | Man page Source code |
| splicesite_rowwise | Man page Source code |
| stdPipeline_TableOutput | Man page Source code |
| std_metadataCollector | Man page Source code |
| tsgParseTable | Man page Source code |
| wrapper_row_cancerHotspots | Man page Source code |
| wrapper_table_cancerHotspots | Man page Source code |
