cosmic_sql_search: Count variant occurences per tissue in COSMIC db

In manzomonza/auto-ngs-annotation: Editing, Parsing And Annotation of ThermoFisher IonReporter and Genexus Precision NGS Results

Count variant occurences per tissue in COSMIC db

Description

Count variant occurences per tissue in COSMIC db

Usage

cosmic_sql_search(gene, change, sql_con_tbl)

Arguments

gene	Character string containing gene symbol
change	Character string with coding or amino acid change
sql_con_tbl	Established SQL connection to COSMIC db

Value

Returns list with total count and tissue specific counts

Examples

GATA3 p.M294K returns list with
COSMIC_n_tissue breast (43)
COSMIC_n_total 43

manzomonza/auto-ngs-annotation documentation built on Aug. 26, 2023, 10:25 a.m.