clinvarCheck: Check, download and update Clinvar Summary Table (from NIH)...
In manzomonza/auto-ngs-annotation: Editing, Parsing And Annotation of ThermoFisher IonReporter and Genexus Precision NGS Results
View source: R/clinvar_variant_info_check.R
clinvarCheck R Documentation
Check, download and update Clinvar Summary Table (from NIH)
Checks for presence of Clinvar variant summary file (and it being up-to-date).
If not present (or up-to date, downloads from NIH at absolute path)
Caveat: Absolute paths are specified
Description
Check, download and update Clinvar Summary Table (from NIH)
Checks for presence of Clinvar variant summary file (and it being up-to-date).
If not present (or up-to date, downloads from NIH at absolute path)
Caveat: Absolute paths are specified
Usage
clinvarCheck()
Arguments
CLINVAR_SUMMARY_FILEPATH
Absolute filepath of clinvar summary file
Value
Boolean indicating if downloaded file has same MD5checksum as MD5checksum on NIH website
manzomonza/auto-ngs-annotation documentation built on Aug. 26, 2023, 10:25 a.m.
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View source: R/clinvar_variant_info_check.R
| clinvarCheck | R Documentation |
Check, download and update Clinvar Summary Table (from NIH) Checks for presence of Clinvar variant summary file (and it being up-to-date). If not present (or up-to date, downloads from NIH at absolute path) Caveat: Absolute paths are specified
Description
Check, download and update Clinvar Summary Table (from NIH) Checks for presence of Clinvar variant summary file (and it being up-to-date). If not present (or up-to date, downloads from NIH at absolute path) Caveat: Absolute paths are specified
Usage
clinvarCheck()
Arguments
CLINVAR_SUMMARY_FILEPATH |
Absolute filepath of clinvar summary file |
Value
Boolean indicating if downloaded file has same MD5checksum as MD5checksum on NIH website
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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