download.genome: Download genomes of selected species
In maous1/Syngulon: analyse bacteria genome
View source: R/download.genome.R
Description
Download genomes of selected species
Usage
1
download.genome(species, maxOrganism, indextostart, accessionDir, outDir)
Arguments
species
a vector of character including the species that we want to analyze
maxOrganism
a value with the number of genome we want to download for each species
indextostart
: the index to restart the analysis. for example, if you interupted the analysis after 20 species, you can specify indextorestart=21
accessionDir
the directory where the accession files can be found
outDir
The output directory
maous1/Syngulon documentation built on Jan. 29, 2021, 12:39 p.m.
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View source: R/download.genome.R
Description
Download genomes of selected species
Usage
1 | download.genome(species, maxOrganism, indextostart, accessionDir, outDir)
|
Arguments
species |
a vector of character including the species that we want to analyze |
maxOrganism |
a value with the number of genome we want to download for each species |
indextostart |
: the index to restart the analysis. for example, if you interupted the analysis after 20 species, you can specify indextorestart=21 |
accessionDir |
the directory where the accession files can be found |
outDir |
The output directory |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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