screenBlast: Screen a sequence using Blast
In maous1/Syngulon: analyse bacteria genome
Description
Usage
Arguments
Value
Description
You provide a reference and a querry and the function compute the percentage of the reference which is covered by the querry
Usage
1
screenBlast(reference, querry, min.pc.ident, min.pc.length)
Arguments
reference
the reference sequence that you want to screen. Fasta file in one or severa sequences
querry
the querry sequence. Fasta file in one or severa sequences
min.pc.length
dir.out
the directory of the output
Value
numeric value of the percentage of the reference sequence which is covered by the querry
maous1/Syngulon documentation built on Jan. 29, 2021, 12:39 p.m.
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Description Usage Arguments Value
Description
You provide a reference and a querry and the function compute the percentage of the reference which is covered by the querry
Usage
1 | screenBlast(reference, querry, min.pc.ident, min.pc.length)
|
Arguments
reference |
the reference sequence that you want to screen. Fasta file in one or severa sequences |
querry |
the querry sequence. Fasta file in one or severa sequences |
min.pc.length |
|
dir.out |
the directory of the output |
Value
numeric value of the percentage of the reference sequence which is covered by the querry
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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