read_atlantis: Read in Atlantis Files

In mareframe/rlantis: Atlantis Helper Tool for R

Description

This function read in the appropriate input and output files for other rlantis routines

Usage

read_atlantis(indir, outdir, bgm = TRUE, ssb = TRUE, fg = TRUE,
  bm = TRUE, boxbio = TRUE, vertsize = TRUE)

Arguments

indir	The directory containing the Atlantis model input files
outdir	The directory containing the Atlantis model output files
bgm	Read in model BGM file (default: TRUE)
ssb	Read in spawning stock biomass file (default: TRUE)
fg	Read in functional group CSV (default: TRUE)
boxbio	Read in the box biomass file (default: TRUE)
vertsize	Read in the vertebrate size text file (default: TRUE)

Details

This function will sets up an rlantis object, at present just a list, which the other output functions call on.

mareframe/rlantis documentation built on May 21, 2019, 11:45 a.m.