dummy_salt: Generate salinity forcing data for Atlantis
In mareframe/rlantis: Atlantis Helper Tool for R

Description Usage Arguments Details See Also Examples

This function generates the salinity forcing file for Atlantis.

1 2	dummy_salt(b, z, time, salt, start_time, fill_value = 35, model_name, bgm_file, gen_nc = FALSE, keep_cdf = TRUE)

`b`	Number of boxes
`z`	Number of vertical boxes (i.e. layers)
`time`	A vector of time points (in seconds) between consecutive measurements
`salt`	A `b` by `z` by `time` data.frame or matrix with each entry corresponding to a salinity measurement at a specific time.
`start_time`	String variable of the format YYYY-MM-DD HH:MM:SS +0
`fill_value`	Fill value for missing data. Defaults to 35.
`model_name`	Name of the model.
`bgm_file`	Name of the bgm file. Include the file extension!
`gen_nc`	Generate the nc binary? Defaults to FALSE and required netcdf-bin to be installed.
`keep_cdf`	Keep the readable cdf file? Defaults to TRUE.

This function generates the salinity forcing data for Atlantis in the ncdf4 file format and generates a binary. This function can compress the resultant cdf file if gen_nc = TRUE is set and can clean up after itself if keep_cdf = FALSE is set.

dummy_temp,gen_init,dummy_hydro

salt <- matrix(c(35.1345, 35.1319, 35.1598, 35.1781, 35.1754, 35.1649, 35.1345, 35.1241, 35.1951, 35.2213, 35.2308, 35.2257, 35.2146, 35.1241),nrow = 2)
b <- 1
z <- 7
bgm_file <- "atlantis_test.bgm"
model_name <- "atlantis"
start_time = "2014-01-01 00:00:00 +0"
time <- c(12,24)
gen_salt(b=b,z=z,time=time, salt = salt, start_time = start_time, model_name= model_name, bgm_file=bgm_file, gen_nc=TRUE)