Man pages for maribraga/evolnets
Reconstruct Ancestral Networks Inferred In RevBayes
| events_counter | Calculate the rate of host-repertoire evolution |
| evolnets | evolnets: a package for summarizing inference of network... |
| get_sampled_networks | Get posterior samples of networks of interactions of extant... |
| get_summary_networks | Get summary networks from posterior probabilities of... |
| index_at_ages_samples | Posterior distribution of network structure indices across... |
| index_at_ages_summary | Network structure indices across ancestral summary networks... |
| match_modules | Match modules of different ancestral networks across time. |
| modules_across_ages | Evolution of modules: find and match modules across time... |
| modules_from_samples | Find modules in networks sampled across MCMC at specific time... |
| modules_from_summary_networks | Identify modules for each summary network at each age |
| mycomputeModules | Modified version of bipartite's computeModules function |
| pairwise_membership | Calculate frequency that pairs of nodes fall within the same... |
| plot_ancestral_networks | Plot ancestral networks with module information |
| plot_ancestral_states | Plot ancestral states on the phylogeny. |
| plot_extant_matrix | Plot a network with modules as an adjacency matrix |
| plot_index_at_ages | Plot network structure indices across ancestral summary,... |
| plot_matrix_phylo | Plot a network with modules as an adjacency matrix, with... |
| plot_network_at_age | Plot one ancestral network with module information at a given... |
| posterior_at_ages | Calculate the posterior probability of ancestral host... |
| posterior_at_nodes | Calculate the posterior probability of ancestral host... |
| read_history | Read history.txt file produced by RevBayes |
| read_tree_from_revbayes | Read symbiont tree file produced by RevBayes containing node... |
| support_for_modules | Calculate support for modules from summary networks based on... |
