evolnets: evolnets: a package for summarizing inference of network...
In maribraga/evolnets: Reconstruct Ancestral Networks Inferred In RevBayes
evolnets R Documentation
evolnets: a package for summarizing inference of network evolution
Description
The evolnets package provides three categories of important functions:
rates, ancestral states and samples.
Rates
These functions are used to calculate effective rates of host-repertoire
evolution: effective_rate( ), count_events( ), rate_gl( ), count_gl( ).
Ancestral states
These functions are used to calculate the posterior probabilities of
host-parasite interactions at internal nodes of the parasite tree or at
specific time points in the past: posterior_at_nodes( ), posterior_at_ages( ).
Samples
These functions perform calculations for each sampled host-parasite
network during MCMC: samples_at_ages( ), Q_posterior_at_ages( ),
NODF_posterior_at_ages( ).
More information
Run vignette("intro_to_evolnets") for an example of how to use the package.
Author(s)
Maintainer: Mariana P Braga mpiresbr@gmail.com (ORCID)
Authors:
Wouter van der Bijl
Michael Landis
See Also
Useful links:
maribraga/evolnets documentation built on Feb. 3, 2025, 6:46 p.m.
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| evolnets | R Documentation |
evolnets: a package for summarizing inference of network evolution
Description
The evolnets package provides three categories of important functions: rates, ancestral states and samples.
Rates
These functions are used to calculate effective rates of host-repertoire evolution: effective_rate( ), count_events( ), rate_gl( ), count_gl( ).
Ancestral states
These functions are used to calculate the posterior probabilities of host-parasite interactions at internal nodes of the parasite tree or at specific time points in the past: posterior_at_nodes( ), posterior_at_ages( ).
Samples
These functions perform calculations for each sampled host-parasite network during MCMC: samples_at_ages( ), Q_posterior_at_ages( ), NODF_posterior_at_ages( ).
More information
Run vignette("intro_to_evolnets") for an example of how to use the package.
Author(s)
Maintainer: Mariana P Braga mpiresbr@gmail.com (ORCID)
Authors:
Wouter van der Bijl
Michael Landis
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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