mycomputeModules: Modified version of bipartite's computeModules function

In maribraga/evolnets: Reconstruct Ancestral Networks Inferred In RevBayes

Modified version of bipartite's computeModules function

Description

Modified version of bipartite's computeModules function

Usage

mycomputeModules(
  web,
  method = "Beckett",
  steps = 1e+06,
  tolerance = 1e-10,
  forceLPA = FALSE
)

Arguments

web	Incidence matrix
method	Becket
steps	steps
tolerance	tolerance
forceLPA	FALSE

Value

Modularity Q

Examples

## Not run: 
  data_path <- system.file("extdata", package = "evolnets")
  extant_net <- read.csv(paste0(data_path,"/interaction_matrix_pieridae.csv"), row.names = 1)

  mod <- mycomputeModules(extant_net)

## End(Not run)

maribraga/evolnets documentation built on Feb. 3, 2025, 6:46 p.m.