calcofi_plot: Produces plots of CALCOFI data

In marinebon/nms4r: Office of National Marine Sanctuaries functions for dataset-specific wrangling and plotting in R

Produces plots of CALCOFI data

Description

This function produces plots of CALCOFI-originated time series data.

Usage

calcofi_plot(
  csv,
  x_fld = "year",
  y_fld = "avg_larvae_count_per_volume_sampled",
  y_trans = "log(y + 1)",
  x_lab = "Year",
  y_lab = "ln(mean abundance + 1)",
  title = NULL,
  yrs_recent = 5,
  interactive = T,
  in_loop = F
)

Arguments

csv	The CALCOFI time series data, in csv format, to be plotted.
x_fld	The column of the time series data to be used for the x-axis of the plot.
y_fld	The column of the time series data to be used for the y-axis of the plot.
y_trans	The transformation to be performed on the data used for the y-axis.
x_lab	The label for the x-axis on the plot.
y_lab	The label for the y-axis on the plot.
title	The label for the title of the plot.
yrs_recent	The number of most recent years to be shaded in the plot.
interactive	A Boolean variable indicating whether the plot is to be interactive or not.
in_loop	A Boolean variable indicating whether an error condition exists.

Value

The output is a plot of time series data.

Examples

## Not run: 
calcofi_plot(csv = "https://raw.githubusercontent.com/marinebon/calcofi-analysis/master/data/Anchovy_CINMS.csv", title = "Anchovy - CINMS Region")

## End(Not run)

marinebon/nms4r documentation built on April 23, 2023, 6:09 p.m.