Files in marinebon/nms4r
Office of National Marine Sanctuaries functions for dataset-specific wrangling and plotting in R

.Rbuildignore
.gitignore
.nojekyll
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/calcofi.R R/calculate_data.R R/data.R R/rocky.R R/spatial.R R/utils-pipe.R README.md
_pkgdown.yml
data-raw/rocky.R
data-raw/rocky_clusters.csv
data-raw/rocky_sites.geojson
data-raw/sanctuaries.R
data-raw/sanctuaries.csv
data-raw/sanctuaries.geojson
data/rocky_clusters.rda
data/rocky_counts.rda
data/rocky_cover.rda
data/rocky_sites.rda
data/rocky_species.rda
data/sanctuaries.rda
docs/.nojekyll
docs/404.html
docs/LICENSE-text.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/Calcofi.html
docs/articles/Calcofi_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Calcofi_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Calcofi_files/anchor-sections-1.0/anchor-sections.js
docs/articles/Erddap.html
docs/articles/Erddap_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Erddap_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Erddap_files/anchor-sections-1.0/anchor-sections.js
docs/articles/Introduction.html
docs/articles/Introduction2.html
docs/articles/Introduction2_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Introduction2_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Introduction2_files/anchor-sections-1.0/anchor-sections.js
docs/articles/Introduction2_files/dygraphs-1.1.1/dygraph-combined-dev.js
docs/articles/Introduction2_files/dygraphs-1.1.1/dygraph-combined.js
docs/articles/Introduction2_files/dygraphs-1.1.1/dygraph.css
docs/articles/Introduction2_files/dygraphs-1.1.1/shapes.js
docs/articles/Introduction2_files/dygraphs-binding-1.1.1.6/dygraphs.js
docs/articles/Introduction2_files/htmlwidgets-1.5.2/htmlwidgets.js
docs/articles/Introduction2_files/jquery-1.11.1/AUTHORS.txt
docs/articles/Introduction2_files/jquery-1.11.1/jquery.min.js
docs/articles/Introduction2_files/moment-2.8.4/moment-timezone-with-data.js
docs/articles/Introduction2_files/moment-2.8.4/moment.js
docs/articles/Introduction2_files/moment-fquarter-1.0.0/moment-fquarter.min.js
docs/articles/Introduction2_files/moment-timezone-0.2.5/moment-timezone-with-data.js
docs/articles/Introduction2_files/moment-timezone-0.2.5/moment.js
docs/articles/Introduction_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Introduction_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Introduction_files/anchor-sections-1.0/anchor-sections.js
docs/articles/Introduction_files/dygraphs-1.1.1/dygraph-combined-dev.js
docs/articles/Introduction_files/dygraphs-1.1.1/dygraph-combined.js
docs/articles/Introduction_files/dygraphs-1.1.1/dygraph.css
docs/articles/Introduction_files/dygraphs-1.1.1/shapes.js
docs/articles/Introduction_files/dygraphs-binding-1.1.1.6/dygraphs.js
docs/articles/Introduction_files/htmlwidgets-1.5.2/htmlwidgets.js
docs/articles/Introduction_files/jquery-1.11.1/AUTHORS.txt
docs/articles/Introduction_files/jquery-1.11.1/jquery.min.js
docs/articles/Introduction_files/moment-2.8.4/moment-timezone-with-data.js
docs/articles/Introduction_files/moment-2.8.4/moment.js
docs/articles/Introduction_files/moment-fquarter-1.0.0/moment-fquarter.min.js
docs/articles/Introduction_files/moment-timezone-0.2.5/moment-timezone-with-data.js
docs/articles/Introduction_files/moment-timezone-0.2.5/moment.js
docs/articles/Marine.html
docs/articles/Marine_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Marine_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Marine_files/anchor-sections-1.0/anchor-sections.js
docs/articles/Overview.html
docs/articles/Overview_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Overview_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Overview_files/anchor-sections-1.0/anchor-sections.js
docs/articles/Reporting.html
docs/articles/Reporting_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Reporting_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Reporting_files/anchor-sections-1.0/anchor-sections.js
docs/articles/Utilities.html
docs/articles/Utilities_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Utilities_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Utilities_files/anchor-sections-1.0/anchor-sections.js
docs/articles/example_image_illustrator.png
docs/articles/example_image_illustrator_layers.png
docs/articles/example_image_inkscape.png
docs/articles/example_image_inkscape_panels.png
docs/articles/example_image_inkscape_panels2.png
docs/articles/file_structure.png
docs/articles/index.html
docs/articles/onmsR.html
docs/articles/onmsR_files/accessible-code-block-0.0.1/empty-anchor.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/calcofi_map.html
docs/reference/calcofi_plot.html
docs/reference/calculate_SST_anomaly.html
docs/reference/calculate_statistics.html
docs/reference/create_website.html
docs/reference/figures/logo.png
docs/reference/figures/nms4r.png
docs/reference/figures/nms4r.svg
docs/reference/figures/onmsR.svg
docs/reference/generate_html_4_rmd.html
docs/reference/get_dates.html
docs/reference/get_figure_info.html
docs/reference/get_modal_info.html
docs/reference/get_nms_polygons.html
docs/reference/glossarize_md.html
docs/reference/index.html
docs/reference/initial_build.html
docs/reference/insert_tooltip.html
docs/reference/make_rocky_sites.html
docs/reference/make_sites_csv.html
docs/reference/map_nms_sites.html
docs/reference/md_caption.html
docs/reference/pipe.html
docs/reference/plot_SST_anomaly.html
docs/reference/plot_intertidal_nms.html
docs/reference/plot_metric_timeseries.html
docs/reference/ply2erddap.html
docs/reference/read_csv_fmt.html
docs/reference/render_all_rmd.html
docs/reference/render_figure.html
docs/reference/rmd2html.html
docs/reference/rocky_clusters.html
docs/reference/rocky_counts.html
docs/reference/rocky_cover.html
docs/reference/rocky_map.html
docs/reference/rocky_pctcover.html
docs/reference/rocky_site_groups.html
docs/reference/rocky_sites.html
docs/reference/rocky_species.html
docs/reference/rocky_timeseries.html
docs/reference/rocky_tsplot.html
docs/reference/sanctuaries.html
docs/sitemap.xml
inst/template_website/_site.yml
inst/template_website/_svg-html_child.Rmd inst/template_website/index.Rmd
inst/template_website/index.html
inst/template_website/libs/bootstrap-toggle.min.css
inst/template_website/libs/bootstrap-toggle.min.js
inst/template_website/libs/d3.v5.min.js
inst/template_website/libs/infographiq.js
inst/template_website/libs/styles.css
inst/template_website/modals/_site.yml
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/bootstrap-theme.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/bootstrap-theme.css.map
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/bootstrap-theme.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/bootstrap.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/bootstrap.css.map
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/bootstrap.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/cerulean.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/cosmo.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/darkly.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/flatly.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/Lato.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/LatoBold.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/OpenSans.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/Raleway.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/Roboto.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/journal.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/lumen.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/paper.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/readable.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/sandstone.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/simplex.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/spacelab.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/united.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/css/yeti.min.css
inst/template_website/modals/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
inst/template_website/modals/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
inst/template_website/modals/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
inst/template_website/modals/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
inst/template_website/modals/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
inst/template_website/modals/site_libs/bootstrap-3.3.5/js/bootstrap.js
inst/template_website/modals/site_libs/bootstrap-3.3.5/js/bootstrap.min.js
inst/template_website/modals/site_libs/bootstrap-3.3.5/js/npm.js
inst/template_website/modals/site_libs/bootstrap-3.3.5/shim/html5shiv.min.js
inst/template_website/modals/site_libs/bootstrap-3.3.5/shim/respond.min.js
inst/template_website/modals/site_libs/highlightjs-9.12.0/default.css
inst/template_website/modals/site_libs/highlightjs-9.12.0/highlight.js
inst/template_website/modals/site_libs/highlightjs-9.12.0/textmate.css
inst/template_website/modals/site_libs/jquery-1.11.3/jquery.min.js
inst/template_website/modals/site_libs/navigation-1.1/codefolding.js
inst/template_website/modals/site_libs/navigation-1.1/sourceembed.js
inst/template_website/modals/site_libs/navigation-1.1/tabsets.js
inst/template_website/modals/topic1.Rmd
inst/template_website/modals/topic1.html
inst/template_website/modals/topic2.Rmd
inst/template_website/modals/topic2.html
inst/template_website/modals/topic3.Rmd
inst/template_website/modals/topic3.html
inst/template_website/modals/topic4.Rmd
inst/template_website/modals/topic4.html
inst/template_website/site_libs/bootstrap-3.3.5/css/bootstrap-theme.css
inst/template_website/site_libs/bootstrap-3.3.5/css/bootstrap-theme.css.map
inst/template_website/site_libs/bootstrap-3.3.5/css/bootstrap-theme.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/bootstrap.css
inst/template_website/site_libs/bootstrap-3.3.5/css/bootstrap.css.map
inst/template_website/site_libs/bootstrap-3.3.5/css/bootstrap.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/cerulean.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/cosmo.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/darkly.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/flatly.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/Lato.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/LatoBold.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/OpenSans.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/Raleway.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/Roboto.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
inst/template_website/site_libs/bootstrap-3.3.5/css/journal.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/lumen.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/paper.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/readable.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/sandstone.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/simplex.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/spacelab.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/united.min.css
inst/template_website/site_libs/bootstrap-3.3.5/css/yeti.min.css
inst/template_website/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
inst/template_website/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
inst/template_website/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
inst/template_website/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
inst/template_website/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
inst/template_website/site_libs/bootstrap-3.3.5/js/bootstrap.js
inst/template_website/site_libs/bootstrap-3.3.5/js/bootstrap.min.js
inst/template_website/site_libs/bootstrap-3.3.5/js/npm.js
inst/template_website/site_libs/bootstrap-3.3.5/shim/html5shiv.min.js
inst/template_website/site_libs/bootstrap-3.3.5/shim/respond.min.js
inst/template_website/site_libs/highlightjs-9.12.0/default.css
inst/template_website/site_libs/highlightjs-9.12.0/highlight.js
inst/template_website/site_libs/highlightjs-9.12.0/textmate.css
inst/template_website/site_libs/jquery-1.11.3/jquery.min.js
inst/template_website/site_libs/navigation-1.1/codefolding.js
inst/template_website/site_libs/navigation-1.1/sourceembed.js
inst/template_website/site_libs/navigation-1.1/tabsets.js
inst/template_website/subject2.Rmd
inst/template_website/subject2.html
inst/template_website/svg/example1.svg
inst/template_website/svg/example2.svg
inst/template_website/svg/illustrator-example.svg
inst/template_website/svg/inkscape-example.svg
inst/template_website/svg/svg_links_template.csv
man/.DS_Store
man/calcofi_map.Rd man/calcofi_plot.Rd man/calculate_SST_anomaly.Rd man/calculate_statistics.Rd
man/figures/onmsR.svg
man/get_dates.Rd man/get_nms_polygons.Rd man/make_rocky_sites.Rd man/pipe.Rd man/plot_SST_anomaly.Rd man/plot_metric_timeseries.Rd man/ply2erddap.Rd man/read_csv_fmt.Rd man/rocky_clusters.Rd man/rocky_counts.Rd man/rocky_cover.Rd man/rocky_map.Rd man/rocky_sites.Rd man/rocky_species.Rd man/rocky_tsplot.Rd man/sanctuaries.Rd
onmsR.Rproj
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
vignettes/.gitignore
vignettes/Calcofi.Rmd vignettes/Erddap.Rmd vignettes/Marine.Rmd vignettes/onmsR.Rmd
marinebon/nms4r documentation built on April 23, 2023, 6:09 p.m.