Files in marioni-group/MethylPipeR
MethylPipeR
.Rbuildignore
.github/CONTRIBUTING.md
.github/workflows/R-CMD-check.yml
.gitignore
CITATION.cff
DESCRIPTION
LICENSE
NAMESPACE
R/MethylPipeR.R
R/bart.R
R/cv.R
R/exploratory_analysis_plot.R
R/fitmprmodel_functions.R
R/logging.R
R/metrics_plotting.R
R/model_fitting.R
R/model_prediction.R
R/pipeline_functions.R
R/pipeline_modules.R
R/predictmprmodel_functions.R
R/rf.R
R/roc.R
R/utilities.R
README.md
codemeta.json
inst/WORDLIST
man/assignTrainingFolds.Rd
man/beginPipelineRun.Rd
man/calculateMetricsBinaryClassifier.Rd
man/checkMatrixOrDF.Rd
man/checkMethod.Rd
man/checkMethodPackageInstalled.Rd
man/checkNA.Rd
man/checkType.Rd
man/createClassWeights.Rd
man/endPipelineRun.Rd
man/fitBARTSurvival.Rd
man/fitCoxModel.Rd
man/fitCoxPH.Rd
man/fitLogisticModel.Rd
man/fitMPRModel.Rd
man/fitMPRModelCV.Rd
man/fitMPRModelIncremental.Rd
man/getBalancedCVFoldIDs.Rd
man/getGroupCVFoldIDs.Rd
man/getNonZeroCoefficients.Rd
man/incrementalTest.Rd
man/initLogs.Rd
man/loadData.Rd
man/logSessionLines.Rd
man/multipleROC.Rd
man/plotMPRIncrementalModelConfusionMatrix.Rd
man/plotMPRIncrementalModelROC.Rd
man/plotSingleVariableDensity.Rd
man/plotVariableByGroupDensity.Rd
man/predictCoxModel.Rd
man/predictLogisticModel.Rd
man/predictMPRModel.Rd
man/removeDeathsFromControls.Rd
man/rfCV.Rd
man/saveMPRModelObject.Rd
man/thresholdTTE.Rd
man/trainAndTestRF.Rd
methylpiper.Rproj
tests/spelling.R
tests/testthat.R
tests/testthat/test_fitmprmodel.R
tests/testthat/test_fitmprmodelcv.R
tests/testthat/test_incremental_model.R
tests/testthat/test_logging.R
tests/testthat/test_predictmprmodel.R
