Files in marioni-group/MethylPipeR
MethylPipeR

.Rbuildignore
.github/CONTRIBUTING.md
.github/workflows/R-CMD-check.yml
.gitignore
CITATION.cff
DESCRIPTION
LICENSE
NAMESPACE
R/MethylPipeR.R R/bart.R R/cv.R R/exploratory_analysis_plot.R R/fitmprmodel_functions.R R/logging.R R/metrics_plotting.R R/model_fitting.R R/model_prediction.R R/pipeline_functions.R R/pipeline_modules.R R/predictmprmodel_functions.R R/rf.R R/roc.R R/utilities.R README.md
codemeta.json
inst/WORDLIST
man/assignTrainingFolds.Rd man/beginPipelineRun.Rd man/calculateMetricsBinaryClassifier.Rd man/checkMatrixOrDF.Rd man/checkMethod.Rd man/checkMethodPackageInstalled.Rd man/checkNA.Rd man/checkType.Rd man/createClassWeights.Rd man/endPipelineRun.Rd man/fitBARTSurvival.Rd man/fitCoxModel.Rd man/fitCoxPH.Rd man/fitLogisticModel.Rd man/fitMPRModel.Rd man/fitMPRModelCV.Rd man/fitMPRModelIncremental.Rd man/getBalancedCVFoldIDs.Rd man/getGroupCVFoldIDs.Rd man/getNonZeroCoefficients.Rd man/incrementalTest.Rd man/initLogs.Rd man/loadData.Rd man/logSessionLines.Rd man/multipleROC.Rd man/plotMPRIncrementalModelConfusionMatrix.Rd man/plotMPRIncrementalModelROC.Rd man/plotSingleVariableDensity.Rd man/plotVariableByGroupDensity.Rd man/predictCoxModel.Rd man/predictLogisticModel.Rd man/predictMPRModel.Rd man/removeDeathsFromControls.Rd man/rfCV.Rd man/saveMPRModelObject.Rd man/thresholdTTE.Rd man/trainAndTestRF.Rd
methylpiper.Rproj
tests/spelling.R tests/testthat.R tests/testthat/test_fitmprmodel.R tests/testthat/test_fitmprmodelcv.R tests/testthat/test_incremental_model.R tests/testthat/test_logging.R tests/testthat/test_predictmprmodel.R
marioni-group/MethylPipeR documentation built on Oct. 10, 2024, 3:32 p.m.