predictCoxModel: This function is for an older version of MethylPipeR and is...

In marioni-group/MethylPipeR: MethylPipeR

This function is for an older version of MethylPipeR and is now deprecated. It is currently still included to allow old scripts to run correctly. Calculate linear model predictions using glmnet Cox model.

Description

This function is for an older version of MethylPipeR and is now deprecated. It is currently still included to allow old scripts to run correctly. Calculate linear model predictions using glmnet Cox model.

Usage

predictCoxModel(model, xs, pipelineRunInformation, modelLabel)

Arguments

model	A Cox glmnet model object.
xs	A matrix/data.frame corresponding to X (variables). Columns should correspond to features.
pipelineRunInformation	The object originally created by beginPipelineRun.
modelLabel	A string that will act as a label for this function call. The label will be used as a prefix for the saved object file names in this function call.

Value

A vector of model predictions.

marioni-group/MethylPipeR documentation built on Oct. 10, 2024, 3:32 p.m.