incrementalTest: incrementalTest Fits incremental logistic models (a null...

In marioni-group/MethylPipeR: MethylPipeR

incrementalTest Fits incremental logistic models (a null model and a full model corresponding to covariates only and covariates+score respectively).

Description

incrementalTest Fits incremental logistic models (a null model and a full model corresponding to covariates only and covariates+score respectively).

Usage

incrementalTest(
  X,
  yColname,
  covColnames,
  scoreColname,
  family = "binomial",
  pipelineRunInformation
)

Arguments

X	A matrix/data.frame with columns corresponding to the labels, all covariates and the score to be evaluated.
yColname	The name of the column in X corresponding to the labels.
covColnames	A list/vector of the column names corresponding to covariates.
scoreColname	The name of the column in X corresponding to the score to be evaluated.
family	The glm model family. Default is 'binomial' for logistic regression.
pipelineRunInformation	The object originally created by beginPipelineRun.

Value

A list containing results for the null and full models. For both model types, the formula string, glm model object, response, AUC and PRAUC are returned.

marioni-group/MethylPipeR documentation built on Oct. 10, 2024, 3:32 p.m.