plotlyMesh_all: A layout for plotly graphs with a time slider

In marionlouveaux/cellviz3d: Tools for 3D/4D interactive visualization of cells and biological tissues

Description

This function provides a basic layout for plotly graphs with a time sliders. It can be used to display MGX meshes of a time serie.

Usage

plotlyMesh_all(meshExample, graphExample, meshColors, display,
  defaultColor = list("#CCCCFF", 0.2), heatmapParam)

Arguments

meshExample	One or several meshes.
graphExample	One or several cell graphs.
meshColors	Colors for each mesh.
display	Display type. 'labels', 'heatmap' or 'none'.
defaultColor	Uniform mesh color (HEX color and alpha value between 0 and 1). Needed only if 'none' display type is chosen.
heatmapParam	Variable (from cell graph) to display if 'heatmap' display type is selected.

Value

plotly graph

Examples

## Not run: 
mesh.all <- readRDS(system.file("extdata",
 "mgx/2013-02-12_LTi6B_dis_A_all_normalMesh_full.rds",
  package = "cellviz3d"))
cellgraph.all <- readRDS(system.file("extdata",
 "mgx/2013-02-12_LTi6B_dis_A_all_cellGraph_full.rds",
  package = "cellviz3d"))

  # Heatmap of cell area for all timepoints of the dataset
  plotlyMesh_all <- function(meshExample = mesh.all,
   graphExample = cellgraph.all,
    meshColors = list(NULL, NULL, NULL, NULL, NULL),
    display = 'heatmap',
    defaultColor = list("#CCCCFF", 0.2),
    heatmapParam = "GeometryArea")


## End(Not run)

marionlouveaux/cellviz3d documentation built on May 20, 2019, 9:55 a.m.