createRUVM: Create an M matrix for the RUV normalization

In markdane/MEMA: Functions to preprocess and normalize MEMA data

Description

Each row is for a unit to be normalized and each column is a unique replicate type Each row will have a 1 to indicate the replicate type all other values will be 0

Usage

createRUVM(dt, replicateCols = c("CellLine", "Ligand", "Drug"))

Arguments

dt	The datatable to be normalized that has columns Barcode, Well and those in the replicateCols parameter.
replicateCols	A character vector of column names in dt that define a replicate well.

Value

A matrix suitable for defining the dataset structure in RUV normalization

markdane/MEMA documentation built on May 21, 2019, 11:48 a.m.