Files in markrobinsonuzh/DAMEfinder
Finds DAMEs - Differential Allelicly MEthylated regions

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/DAMEfinder-package.R R/calc_asm.R R/calc_derivedasm.R R/data.R R/empirical_pval.R R/find_dames.R R/get_tstats.R R/median_tracks.R R/methyl_MDS_plot.R R/methyl_circle_plot.R R/read_tuples.R R/score_tracks.R R/simes_pval.R R/split_bams.R R/split_reads.R README.md
data/extractbams_output.rda
data/readtuples_output.rda
inst/NEWS.Rd
inst/extdata/CRC1.chr19.trim.vcf
inst/extdata/CRC1_chr19.qs.CG.2.tsv.gz
inst/extdata/CRC1_chr19_trim.bam
inst/extdata/CRC1_chr19_trim.bam.bai
inst/extdata/NORM1.chr19.trim.vcf
inst/extdata/NORM1_chr19.qs.CG.2.tsv.gz
inst/extdata/NORM1_chr19_trim.bam
inst/extdata/NORM1_chr19_trim.bam.bai
inst/figures/DAME_only30reads.png
inst/figures/DAME_snp_allsamps.png
inst/figures/DAME_snp_allsamps_median.png
inst/figures/DAME_snp_sampledreads.png
inst/figures/DAME_tuple_allsamps.png
inst/figures/DAME_tuple_allsamps_median.png
inst/figures/DAMEfinder_workflow.png
inst/figures/damefindersticker.png
inst/scripts/extractbams_output.R
inst/scripts/file_description.txt
inst/scripts/readtuples_output.R man/DAMEfinder.Rd man/calc_asm.Rd man/calc_derivedasm.Rd man/calc_logodds.Rd man/calc_score.Rd man/calc_weight.Rd man/dame_track.Rd man/dame_track_mean.Rd man/empirical_pval.Rd man/extract_bams.Rd man/extractbams_output.Rd man/find_dames.Rd man/getMD.Rd man/get_tstats.Rd man/methyl_MDS_plot.Rd man/methyl_circle_plot.Rd man/methyl_circle_plotCpG.Rd man/modulus_sqrt.Rd man/read_tuples.Rd man/readtuples_output.Rd man/simes_pval.Rd man/splitReads.Rd tests/testthat.R tests/testthat/test-dame_track.R tests/testthat/test-dame_track_median.R tests/testthat/test-derivedasm_dames.R tests/testthat/test-mdsplot.R tests/testthat/test-methyl_circle_plot.R tests/testthat/test-split_bams.R tests/testthat/test-split_reads.R tests/testthat/test-tupleasm_dames.R vignettes/DAMEfinder_workflow.Rmd
vignettes/papers.bib
markrobinsonuzh/DAMEfinder documentation built on July 20, 2020, 8:07 p.m.