fsrnbr: Accessor and replacement functions for 'fsrnbr' slot

In markrobinsonuzh/iCOBRA: Comparison and Visualization of Ranking and Assignment Methods

Accessor and replacement functions for fsrnbr slot

Description

Accessor and replacement functions for the fsrnbr slot in a COBRAPerformance or COBRAPlot object.

Usage

fsrnbr(x, ...)

fsrnbr(x, ...) <- value

## S4 method for signature 'COBRAPerformance'
fsrnbr(x)

## S4 replacement method for signature 'COBRAPerformance,data.frame'
fsrnbr(x) <- value

## S4 replacement method for signature 'COBRAPlot,data.frame'
fsrnbr(x) <- value

Arguments

x	A COBRAPerformance or COBRAPlot object.
...	Additional arguments.
value	A data frame giving information about the observed FSR and the number of features called positive for each method and each stratification level, at various s-value thresholds. If the object does not have an fsrnbr slot (older versions of the class did not have this slot), an empty data frame is returned for simplicity.

Value

The accessor function returns a data frame giving information about the observed FSR and the number of features called positive for each method and each stratification level, at various s-value thresholds.

Author(s)

Charlotte Soneson

Examples

cobradata <- cobradata_example_sval

cobraperf <- calculate_performance(cobradata, 
                                   cont_truth = "logFC", 
                                   aspects = "fsrnbr")
head(fsrnbr(cobraperf))

markrobinsonuzh/iCOBRA documentation built on March 28, 2024, 2:01 p.m.