fsrnbrcurve: Accessor and replacement functions for 'fsrnbrcurve' slot

In markrobinsonuzh/iCOBRA: Comparison and Visualization of Ranking and Assignment Methods

Accessor and replacement functions for fsrnbrcurve slot

Description

Accessor and replacement functions for the fsrnbrcurve slot in a COBRAPerformance or COBRAPlot object.

Usage

fsrnbrcurve(x, ...)

fsrnbrcurve(x, ...) <- value

## S4 method for signature 'COBRAPerformance'
fsrnbrcurve(x)

## S4 replacement method for signature 'COBRAPerformance,data.frame'
fsrnbrcurve(x) <- value

## S4 replacement method for signature 'COBRAPlot,data.frame'
fsrnbrcurve(x) <- value

Arguments

x	A COBRAPerformance or COBRAPlot object.
...	Additional arguments.
value	A data frame giving information necessary to generate curves of observed FSR vs number of features called positive for each method and each stratification level. If the object does not have an fsrnbrcurve slot (older versions of the class did not have this slot), an empty data frame is returned for simplicity.

Value

The accessor function returns a data frame giving information necessary to generate curves of observed FSR vs number of features called positive for each method and each stratification level.

Author(s)

Charlotte Soneson

Examples

cobradata <- cobradata_example_sval

cobraperf <- calculate_performance(cobradata, 
                                   cont_truth = "logFC", 
                                   aspects = "fsrnbrcurve")
head(fsrnbrcurve(cobraperf))

markrobinsonuzh/iCOBRA documentation built on Nov. 7, 2024, 7:11 a.m.