plotEnrichment: Plot bootstrap enrichment analysis

In martijnmolenaar/bmetenrichr: metabolite set enrichment analysis with bootstrapping

Plot bootstrap enrichment analysis

Description

Plot bootstrap enrichment analysis

Usage

plotEnrichment(object, ...)

Arguments

object	A bmetenrichr object after enrichment analysis.
min.annotations	An integer describing the minimal number of annotations each term should include
q.value.cutoff	A numeric between 0 and 1. Only terms with q-values lower than this value will be displayed.
bootstrap.fraction.cutoff	A numeric between 0 and 1 (default = 0.5), indicating the minimal fraction that the metabolite set is present in all bootstrap iterations.
plotIDs	A logical indicating whether term IDs should be displayed.
by.statistic	A character indicating how the x-axis will be arranged. Can be either 'ES' (enrichment score) or 'q.value' (default).

Value

A ggplot2 object.

Examples

plotEnrichment(myTestRun)

martijnmolenaar/bmetenrichr documentation built on Aug. 16, 2024, 12:20 a.m.