Files in martinenge/RNAseqFunctions
RNA sequencing functions for the Enge lab
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/RNAseqFunctions.R
R/RcppExports.R
R/data.R
R/featureSelectionFuns.R
R/generalFuns.R
R/inputChecks.R
R/loadAndFilterFuns.R
R/normalizationFuns.R
R/plottingFuns.R
R/tsneFuns.R
README.Rmd
README.md
RNAseqFunctions.Rproj
codecov.yml
data/processedCounts.rda
data/testingCounts.rda
data/testingMeta.rda
inst/include/RNAseqFunctions.h
inst/rawdata/processedCounts.R
man/RNAseqFunctions.Rd
man/annotateColumn.Rd
man/annotatePlate.Rd
man/annotateRow.Rd
man/col40.Rd
man/coloursFromTargets.Rd
man/convertCountsToMatrix.Rd
man/cpm.Rd
man/detectERCCreads.Rd
man/detectLowQualityCells.Rd
man/detectLowQualityGenes.Rd
man/detectNonGenes.Rd
man/eigen_cpm.Rd
man/eigen_log2cpm.Rd
man/log2cpm.Rd
man/matrix_to_tibble.Rd
man/moveGenesToRownames.Rd
man/nTopDeltaCV.Rd
man/nTopMax.Rd
man/nTopVar.Rd
man/namedListToTibble.Rd
man/normalizeVec.Rd
man/pearsonsCor.Rd
man/plotData.Rd
man/plotLowQualityCells.Rd
man/plotTsne.Rd
man/pro.counts.Rd
man/pro.meta.Rd
man/processMarkers.Rd
man/removeHTSEQsuffix.Rd
man/runTsne.Rd
man/testingCounts.Rd
man/testingMeta.Rd
src/Makevars
src/Makevars.win
src/RNAseqFunctions.so
src/RcppExports.cpp
src/RcppExports.o
src/normalization.cpp
src/normalization.o
tests/figs/deps.txt
tests/figs/plottingfuns/lowqualitycells.svg
tests/figs/plottingfuns/plottsne-multiplemarkers.svg
tests/figs/plottingfuns/plottsne-nomarker.svg
tests/figs/plottingfuns/plottsne-singlemarker.svg
tests/figs/plottingfuns/plottsne.svg
tests/testthat.R
tests/testthat/test_featureSelection.R
tests/testthat/test_generalFuns.R
tests/testthat/test_inputChecks.R
tests/testthat/test_loadAndFilterFuns.R
tests/testthat/test_metadata_general.R
tests/testthat/test_normalization.R
tests/testthat/test_plottingFuns.R
tests/testthat/test_tsneFuns.R
vignettes/loadAndFilterFuns.Rmd
vignettes/tsneAndPlotting.Rmd
