Man pages for martinenge/RNAseqFunctions
RNA sequencing functions for the Enge lab
| annotateColumn | Annotate column. |
| annotatePlate | Annotate plate. |
| annotateRow | Annotate row. |
| col40 | col40 |
| coloursFromTargets | coloursFromTargets |
| convertCountsToMatrix | convertCountsToMatrix |
| cpm | cpm |
| detectERCCreads | detectERCCreads |
| detectLowQualityCells | detectLowQualityCells |
| detectLowQualityGenes | detectLowQualityGenes |
| detectNonGenes | detectNonGenes |
| eigen_cpm | eigen_cpm |
| eigen_log2cpm | eigen_log2cpm |
| log2cpm | log2cpm |
| matrix_to_tibble | matrix_to_tibble |
| moveGenesToRownames | moveGenesToRownames |
| namedListToTibble | namedListToTibble |
| normalizeVec | normalizeVec |
| nTopDeltaCV | nTopDeltaCV |
| nTopMax | nTopMax |
| nTopVar | nTopVar |
| pearsonsCor | pearsonsCor |
| plotData | plotData |
| plotLowQualityCells | plotLowQualityCells |
| plotTsne | plotTsne |
| processMarkers | processMarkers |
| pro.counts | scRNAseq data from 3 cell lines. |
| pro.meta | Metadata for the counts dataset. |
| removeHTSEQsuffix | removeHTSEQsuffix |
| RNAseqFunctions | A package for Enge lab RNAseq analysis. |
| runTsne | runTsne |
| testingCounts | Simulated data used for testing and demos. |
| testingMeta | Data for testing metadata processing functions. |
