R/MethPed_probeMis.R

In mashranga/MethPed: A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes

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## Function to get missing probe
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"probeMis"
#' Missing probe names from training data compared with input samples.
#' @param x Object in MethPed class. Output of function \link[MethPed]{MethPed}.
#' @return Object in "methped" class. Output of function \link[MethPed]{MethPed}.
#' @examples
#'
#' #################### Loading sample data
#' data(MethPed_sample)
#'
#' #################### Applying MethPed to sample data
#' res<-MethPed(MethPed_sample)
#'
#' #################### The names of the probes that were included in the original
#'                    # classifier but are missing from the data at hand
#' probeMis(res)
#'
#' @export
probeMis<- function(x) {x$probes_missing}