MLH: Calculate multilocus heterozygosity (MLH)
In mastoffel/inbreedR: Analysing Inbreeding Based on Genetic Markers
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
MLH is defined as the total number of heterozygous loci in an individual divided
by the number of loci typed in the focal individual. An MLH of 0.5 thus means
that 50 percent of an indiviudals loci are heterozygous.
Usage
1
MLH(genotypes)
Arguments
genotypes
data.frame with individuals in rows and loci in columns,
containing genotypes coded as 0 (homozygote), 1 (heterozygote) and NA (missing)
Value
Vector of individual multilocus heterozygosities
Author(s)
Martin A. Stoffel (martin.adam.stoffel@gmail.com)
References
Coltman, D. W., Pilkington, J. G., Smith, J. A., & Pemberton, J. M. (1999).
Parasite-mediated selection against inbred Soay sheep in a free-living,
island population. Evolution, 1259-1267.
Examples
1
2
3
data(mouse_msats)
genotypes <- convert_raw(mouse_msats)
het <- MLH(genotypes)
mastoffel/inbreedR documentation built on Feb. 9, 2022, 12:39 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
MLH is defined as the total number of heterozygous loci in an individual divided by the number of loci typed in the focal individual. An MLH of 0.5 thus means that 50 percent of an indiviudals loci are heterozygous.
Usage
1 | MLH(genotypes)
|
Arguments
genotypes |
data.frame with individuals in rows and loci in columns, containing genotypes coded as 0 (homozygote), 1 (heterozygote) and NA (missing) |
Value
Vector of individual multilocus heterozygosities
Author(s)
Martin A. Stoffel (martin.adam.stoffel@gmail.com)
References
Coltman, D. W., Pilkington, J. G., Smith, J. A., & Pemberton, J. M. (1999). Parasite-mediated selection against inbred Soay sheep in a free-living, island population. Evolution, 1259-1267.
Examples
1 2 3 | data(mouse_msats)
genotypes <- convert_raw(mouse_msats)
het <- MLH(genotypes)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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