CID.LoadData: Load data file from directory

In mathewchamberlain/SignacX: Cell Type Identification and Discovery from Single Cell Gene Expression Data

Load data file from directory

Description

Loads 'matrix.mtx' and 'genes.txt' files from a directory.

Usage

CID.LoadData(data.dir, mfn = "matrix.mtx")

Arguments

data.dir	Directory containing matrix.mtx and genes.txt.
mfn	file name; default is 'matrix.mtx'

Value

A sparse matrix with rownames equivalent to the names in genes.txt

Examples

## Not run: 
# Loads data from SPRING

# dir is your path to the "categorical_coloring_data.json" file
dir = "./FullDataset_v1"

# load expression data
E = CID.LoadData(data.dir = dir)

## End(Not run)

mathewchamberlain/SignacX documentation built on March 3, 2023, 2:46 a.m.