CID.Louvain: Detects community substructure by Louvain community detection

In mathewchamberlain/SignacX: Cell Type Identification and Discovery from Single Cell Gene Expression Data

Detects community substructure by Louvain community detection

Description

CID.Louvain determines Louvain clusters from an edge list.

Usage

CID.Louvain(edges)

Arguments

edges

A data frame or matrix with edges

Value

A character vector with the community substructures of the graph corresponding to Louvain clusters.

Examples

## Not run: 
# Loads edges
file.dir = "https://kleintools.hms.harvard.edu/tools/client_datasets/"
file = "CITESEQ_EXPLORATORY_CITESEQ_5K_PBMCS/FullDataset_v1_protein/edges.csv"
download.file(paste0(file.dir, file, "?raw=true"), destfile = "edges.csv")

# data.dir is your path to the "edges.csv" file
edges = CID.LoadEdges(data.dir = ".")

# get louvain clusters from edge list
clusters = CID.Louvain(edges)

## End(Not run)

mathewchamberlain/SignacX documentation built on March 3, 2023, 2:46 a.m.