Man pages for mathornton01/afgencomp
Alignment Free Genetic Comparisons
| countFFMersEnsemble | Count the first five mers for an ensemble of strings |
| countKmersCertain | Get the Kmer Counts for certainty nucleotides (ie remove... |
| countMersCertainFirstFive | Compute Vector of counts for first five kinds of kmers |
| encodeGenome | Encode a Single Genome |
| encodeGenomes | Encode an ensemble of genomes into a numerical form |
| evenlyScaleEnsemble | Evenly scale an ensemble of spectra such that their |
| evenlyScaleSingle | Evenly Scale Signals from their initial size of 'n' to size... |
| getMinimalVarianceFilter | Filter Highest Variance Components of Power Spectra for... |
| getOptimal2DStrategy | Determine Optimal 2D encoding |
| getPhaseSpectraEnsemble | Get the Fourier Phase Spectra for an ensemble of encoded... |
| getPhaseSpectraSingle | Get the Fourier Phase Spectrum for a single encoded Genomic... |
| getPowerSpectraDistances | Get the Power Spectra Distance |
| getPowerSpectraEnsemble | Get the Fourier Power Spectra for an ensemble of encoded... |
| getPowerSpectraSingle | Get the Fourier Power Spectrum for a single encoded Genomic... |
| sarscvaug | GISAID sequence data for 1,397 SARS-CoV-2 Genomes from August... |
| sarscvaugaligned | GISAID sequence data for 1,397 SARS-CoV-2 Genomes from August... |
| sarscvmay | GISAID sequence data for 1,322 SARS-CoV-2 Genomes from May... |
| sarscvmayaligned | Aligned GISAID sequence data for 1,322 SARS-CoV-2 Genomes... |
| tstForMultiGenomes | Test Fourier Power spectra computation with random sequences |
