getPowerSpectraDistances: Get the Power Spectra Distance
In mathornton01/afgencomp: Alignment Free Genetic Comparisons

Description Usage Arguments Value Examples

Computes the Euclidean distances among all of the sequences for all of the power spectra, applying a standard Euclidean distance measure to the entire computed spectrum. The result is returned as a standard pairwise distances matrix.

1	getPowerSpectraDistances(genomeList)

genomeList

Genetic strings expected in a list.

pair-wise distances matrix computed as the euclidean distance among the various power spectra for the sequences provided.

1 2	tg <- c("ACCCAAGAGAGAGCCCCCGAGAGAGAGAGAGAGAGCCCCGAGAGAGCGAGACGAGAC","TAGAGCCGAGATAGAGCCGAGAGTTAGAC","CGGAGAGNNGGAGAGCCCGAGAGTTTGAGNN") dm <- getPowerSpectraDistances(tg);