Man pages for matmu/MouseFM
In-silico methods for genetic finemapping in inbred mice
| annotate_consequences | Annotate with consequences |
| annotate_mouse_genes | Annotate with genes |
| avail_chromosomes | Available chromosomes |
| avail_consequences | Available consequences |
| avail_strains | Available strains |
| backend_request | Send HTTP request to MMUS Server |
| comb | Strain combination builder |
| df2GRanges | Data frame to GenomicRanges::GRanges object |
| df_split | Splits data frame df into subsets with maximum n rows |
| ensembl_rest_vep | Request variant consequences from Variant Effect Predictor... |
| fetch | Fetch |
| finemap | Finemapping of genetic regions |
| finemap_query | Finemap query builder |
| get_top | Best strain combinations |
| getURL | Get backend service url |
| GRanges2df | GenomicRanges::GRanges object to data frame |
| prio | Prioritization of inbred mouse strains for refining genetic... |
| reduction | Reduction factor calculation |
| ref_genome | Reference genome version |
| setURL | Set backend service url |
| vis_reduction_factors | Visualize |
