finemap_query: Finemap query builder

In matmu/MouseFM: In-silico methods for genetic finemapping in inbred mice

Finemap query builder

Description

Finemap query builder

Usage

finemap_query(
  chr,
  start = NULL,
  end = NULL,
  strain1 = NULL,
  strain2 = NULL,
  consequence = NULL,
  impact = NULL,
  thr1 = 0,
  thr2 = 0
)

Arguments

chr	Vector of chromosome names.
start	Optional vector of chromosomal start positions of target regions (GRCm38).
end	Optional vector of chromosomal end positions of target regions (GRCm38).
strain1	First strain set with strains from avail_strains().
strain2	Second strain set with strains from avail_strains().
consequence	Optional vector of consequence types.
impact	Optional vector of impact types.
thr1	Number discordant strains in strain1. Between 0 and length(strain1)-1. 0 by default.
thr2	Number discordant strains in strain2. Between 0 and length(strain2)-1. 0 by default.

Value

Query string.

matmu/MouseFM documentation built on Sept. 3, 2022, 5:46 a.m.