Man pages for matthewcarlucci/DiscoRhythm
Interactive Workflow for Discovering Rhythmicity in Biological Data
| checkJTKperiod | Validate Detection Period for JTK Cycle |
| checkPeriod | Validate Detection Period |
| discoApp | Launch the DiscoRhythm Shiny Application |
| discoBatch | Core DiscoRhythm Workflow |
| discoCheckInput | Import Data for DiscoRhythm Analysis |
| discoColors | Color pallete used by DiscoRhythm for plotting. This palette... |
| discoDesignSummary | Summarize the experimental design |
| discoDFtoSE | Data formatting for DiscoRhythm |
| discoGetSimu | Read in the DiscoRhythm Simulated dataset |
| discoODAexclusionMatrix | Algorithm Exclusion Matrix |
| discoODAid2name | Mapping Identifiers to Full Names |
| discoODAs | Execute Oscillation Detection Using DiscoRhythm |
| discoParseMeta | Generate Experiment Metadata |
| discoPCA | Perform PCA |
| discoPCAgetOutliers | Internal function for applying SD cutoff to PCA results... |
| discoPeriodDetection | Detect dataset-wide fits to multiple periodicities |
| discoQC | Quality Control for DiscoRhythm |
| DiscoRhythm-package | DiscoRhythm: Interactive Workflow for Discovering Rhythmicity... |
| discoShinyHandler | Handle Error/Warning messages appropriately with shiny... |
| fisherExact | Extract key values from stats::fisher.test results |
| inferFilteredDesign | DiscoRhythm Experimental Design |
| lmCSmat | Cosinor |
| lmCSmatNoNA | Cosinor Without NA Values |
| PeriodDetection_range | Helper for discoPeriodDetection |
| sincos | sin/cos cosinor operations |
| theme_disco | Common theme elements in DiscoRhythm plots |
