inferFilteredDesign: DiscoRhythm Experimental Design
In matthewcarlucci/DiscoRhythm: Interactive Workflow for Discovering Rhythmicity in Biological Data
inferFilteredDesign R Documentation
DiscoRhythm Experimental Design
Description
Infers the experimental design from various input data
Usage
inferFilteredDesign(se)
Arguments
se
SummarizedExperiment, the main data object used by DiscoRhythm
expected to contain se$ID, se$ReplicateID, se$Time sample metadata and
non-null rownames. See the vignette for more details.
Details
Characteristics of the experiment sampling are gathered to determine which
oscillation deteciton algorithms are suitable.
Value
list with inferred experimental design features needed to perform
replicate analysis and merging in discoRepAnalysis.
matthewcarlucci/DiscoRhythm documentation built on March 24, 2022, 10:22 a.m.
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| inferFilteredDesign | R Documentation |
DiscoRhythm Experimental Design
Description
Infers the experimental design from various input data
Usage
inferFilteredDesign(se)
Arguments
se |
SummarizedExperiment, the main data object used by DiscoRhythm expected to contain se$ID, se$ReplicateID, se$Time sample metadata and non-null rownames. See the vignette for more details. |
Details
Characteristics of the experiment sampling are gathered to determine which oscillation deteciton algorithms are suitable.
Value
list with inferred experimental design features needed to perform replicate analysis and merging in discoRepAnalysis.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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