Files in matthewcarlucci/DiscoRhythm

Interactive Workflow for Discovering Rhythmicity in Biological Data

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/ODAchecks.R R/QC.R R/colors.R R/data.R R/dataInput.R R/disco.R R/parseMeta.R R/pkgname.R R/stats.R R/trigOperations.R R/utils.R README.md

data/discoODAexclusionMatrix.rda

data/discoODAid2name.rda

inst/CITATION

inst/DiscoRhythm_Figure1.png

inst/DiscoRhythm_batch.R inst/DiscoRhythm_report.Rmd

inst/NEWS

inst/app/app.R inst/app/code/server/CSoverview.R inst/app/code/server/PCA.R inst/app/code/server/RegressionPage/preAnalysis.R inst/app/code/server/RegressionPage/regression.R inst/app/code/server/RegressionPage/runAnalysis.R inst/app/code/server/RegressionPage/sessionArchiving.R inst/app/code/server/RegressionPage/visualization.R inst/app/code/server/filtCorrelationInterCT.R inst/app/code/server/metaData.R inst/app/code/server/plots.R inst/app/code/server/rowReplicateAnalysis.R inst/app/code/server/selectData.R inst/app/code/ui/CSoverview.R inst/app/code/ui/PCA.R inst/app/code/ui/aboutPage.R inst/app/code/ui/filtCorrelationInterCT.R inst/app/code/ui/introPage.R inst/app/code/ui/metaData.R inst/app/code/ui/regressionPlot.R inst/app/code/ui/rowReplicateAnalysis.R inst/app/code/ui/selectData.R

inst/app/www/custom_styles.css

inst/app/www/disco_128.png

inst/app/www/disco_32.png

inst/app/www/disco_64.png

inst/app/www/favicon.ico

inst/extdata/Simphony_Example.csv

inst/scripts/generateSimulatedData.R man/DiscoRhythm-package.Rd man/PeriodDetection_range.Rd man/checkJTKperiod.Rd man/checkPeriod.Rd man/discoApp.Rd man/discoBatch.Rd man/discoCheckInput.Rd man/discoColors.Rd man/discoDFtoSE.Rd man/discoDesignSummary.Rd man/discoGetSimu.Rd man/discoODAexclusionMatrix.Rd man/discoODAid2name.Rd man/discoODAs.Rd man/discoPCA.Rd man/discoPCAgetOutliers.Rd man/discoParseMeta.Rd man/discoPeriodDetection.Rd man/discoQC.Rd man/discoShinyHandler.Rd man/fisherExact.Rd man/inferFilteredDesign.Rd man/lmCSmat.Rd man/lmCSmatNoNA.Rd man/sincos.Rd man/theme_disco.Rd tests/testthat.R tests/testthat/test-run-discoBatch.R

vignettes/FilteringSummarySS.jpg

vignettes/IntersampleCorrelationSS.jpg

vignettes/IntroductionSS.jpg

vignettes/OscillationDetectionPrevSS.jpg

vignettes/OscillationDetectionSS.jpg

vignettes/PCASS.jpg

vignettes/PCfitsSS.jpg

vignettes/PeriodDetectionSS.jpg

vignettes/RowSelectionSS.jpg

vignettes/biblio.bib

vignettes/disco_workflow_vignette.Rmd

vignettes/selectDataSS.jpg

vignettes/vignette.css

matthewcarlucci/DiscoRhythm documentation built on March 24, 2022, 10:22 a.m.