add.to.graphs: —————— Augment grahs

In matthiasheinig/QTLnetwork: Basic package to apply random walks for QTL candidate gene priorization

Description

Add TF to CpG edges and trans gene to SNP edges to graphs. This function assumes that you have an object tfbs.ann in the environment. It is not passed as argument (bad style) becuase it is too big (passing by value).

Usage

add.to.graphs(graphs, sentinel, trans.genes, trans.cpgs, tfbs.ann)

Arguments

graphs	list of graph objects to add nodes and edges to
sentinel	character id of the sentinel SNP
trans.genes	character vector of genes in the trans locus
trans.cpgs	character vector of CpGs with trans meQTLs
tfbs.ann	logical indicator matrix with CpGs in the rows and transcription factors as columns

Value

list of graph objects with the nodes and edges added

Author(s)

Matthias Heinig <[e-mail]>

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matthiasheinig/QTLnetwork documentation built on June 29, 2021, 10:11 p.m.