| add.chr.len.anno | cumulative chromosome lengths | 
| convert.vcf | convert .vcf files to MatrixEQTL genotype input | 
| eqtl | basic eQTL interface | 
| eqtl.min.p | basic eQTL interface | 
| eQTLpipeline | full pipeline of eQTL analysis including permutations on HPC... | 
| eqtl.run | basic eQTL interface | 
| manhattan.qtl | make manhattan plots of MatrixEQTL results | 
| myWaitForJobs | basic eQTL interface | 
| trans.qtl | transQTL interface | 
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