| add.chr.len.anno | cumulative chromosome lengths |
| convert.vcf | convert .vcf files to MatrixEQTL genotype input |
| eqtl | basic eQTL interface |
| eqtl.min.p | basic eQTL interface |
| eQTLpipeline | full pipeline of eQTL analysis including permutations on HPC... |
| eqtl.run | basic eQTL interface |
| manhattan.qtl | make manhattan plots of MatrixEQTL results |
| myWaitForJobs | basic eQTL interface |
| trans.qtl | transQTL interface |
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