Description Usage Arguments Value See Also
Basic interface to obtain minimal P-values per gene from MatrixEQTL passing
expression and covariate data in matrices, and genotypes as a file. The
function uses eqtl
.
1 | eqtl.min.p(expr, ...)
|
expr |
expression values in a matrix ngene x nsample |
covar |
covariate values in a matrix ncovar x nsample |
genotype_file_name |
filename of a tab separated file with genotype dosage values (usually between 0 and 2) in a matrix nsnp x nsample |
gene.position |
data.frame with gene positions in the first 4 columns named "chrom", "start", "end", "gene_id" |
snp.pos |
data.frame with SNP positions in the first three columns named "snp_id", "chrom", "snp_pos" |
id |
character indicating an id used for tempfile creation |
the same output as the eqtl
function
Other eqtl functions: eqtl.run
,
eqtl
, myWaitForJobs
,
trans.qtl
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.