pclades: Joint probability of two clades
In maxbiostat/cladeCorrelation: Clade probabilities and correlations under uniform-on-topologies tree probability distributions;
pclades R Documentation
Joint probability of two clades
Description
Joint probability of two clades
Usage
pclades(a, b, n, case = 1, log = FALSE)
Arguments
a
size of clade A.
b
size of clade B.
n
number of taxa.
case
see details
log
logical if TRUE (default is FALSE) returns log probability
Details
case 1: A == B;
case 2: A is contained in B;
case 3: B is contained in A;
case 4: A and B are disjoint and a + b = n;
case 5: A and B are disjoint and a + b < n;
case 6: A and B are incompatible.
Value
(log) joint probability of clades A and B given their sizes.
Examples
pclades(a = 2, b = 3, n = 5, case = 2)
maxbiostat/cladeCorrelation documentation built on July 28, 2023, 2:42 a.m.
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| pclades | R Documentation |
Joint probability of two clades
Description
Joint probability of two clades
Usage
pclades(a, b, n, case = 1, log = FALSE)
Arguments
a |
size of clade A. |
b |
size of clade B. |
n |
number of taxa. |
case |
see details |
log |
logical if TRUE (default is FALSE) returns log probability |
Details
case 1: A == B;
case 2: A is contained in B;
case 3: B is contained in A;
case 4: A and B are disjoint and a + b = n;
case 5: A and B are disjoint and a + b < n;
case 6: A and B are incompatible.
Value
(log) joint probability of clades A and B given their sizes.
Examples
pclades(a = 2, b = 3, n = 5, case = 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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